PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn298521
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 118aa    MW: 13376.6 Da    PI: 10.4794
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn298521genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.7e-141666148
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++  +  gg   +W+ Ia+  g+ R++k+c++rw +yl
       Achn298521 16 KGLWSPEEDEKLMNYMMLRNGGqlgCWSDIAKNAGLQRCGKSCRLRWINYL 66
                     678************99988889**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-221069IPR009057Homeodomain-like
PROSITE profilePS5129419.441170IPR017930Myb domain
SMARTSM007172.4E-71568IPR001005SANT/Myb domain
SuperFamilySSF466897.45E-191894IPR009057Homeodomain-like
PfamPF139219.3E-131981No hitNo description
CDDcd001674.41E-71966No hitNo description
Gene3DG3DSA:1.10.10.603.3E-87093IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MGKDKVNNNS KTKLRKGLWS PEEDEKLMNY MMLRNGGQLG CWSDIAKNAG LQRCGKSCRL  60
RWINYLRPDL KRGAFSPHEE EIIIHLHSIL GNRLVLSPSL SLAFHSMITK LNNVIKT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555035.23e-50PREDICTED: transcription factor MYB46-like
SwissprotQ9LXV23e-42MYB46_ARATH; Transcription factor MYB46
TrEMBLA0A0B2RG483e-50A0A0B2RG48_GLYSO; Transcription factor MYB46
TrEMBLI1N6I23e-50I1N6I2_SOYBN; Uncharacterized protein
STRINGGLYMA19G05080.19e-50(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.17e-37myb domain protein 46